Mass Spectrometry eNewsletter
Critical Mass, Issue 3
September 2004
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 MSeminar: Mass Spectrometry Web Seminars  
Featuring the following LIVE Seminars:
- Finnigan LTQ FT: The Most Advanced LC-MS and MS/MS System Ever
- Finnigan TSQ Quantum for Quantitation: An Introduction
- Environmental Applications for the Finnigan TSQ Quantum: Chloramphenicol, Perchlorate & CDFA
- Top Down Proteomics using the Finnigan LTQ FT
- Tuning the Finnigan TSQ Quantum for high sensitivity and more...

Checkout the latest schedule!!

 Preserving PTMs during Peptide Fragmentation  
During the last several years, Electron Capture Dissociation (ECD) has rapidly evolved as an ideal alternative activation method for peptide and protein sequencing in Fourier-transform ion cyclotron resonance-mass spectrometry (FTICR-MS).
The Finnigan LTQ FT hybrid linear ion trap ICR mass spectrometer for the first time provides a means to perform ECD analysis on complex mixtures of peptides and proteins on an LC timescale.
ECD holds much promise to be a supplementary dissociation technique to collision-induced dissociation (CID). In addition, ECD also permits you to distinguish between leucine and isoleucine residues and even between D- and L-amino acids. Therefore, ECD in combination with CID can be used for unambiguous protein identification, de novo sequencing and complete protein characterization...more on Preserving PTMs during Peptide Fragmentation
Previous: Top-Down Proteomics with the Finnigan LTQ FT

 News: Video Clips, Downloads, Seminars and more...
- Introduction to the most sensitive and advanced Triple Quad [Video Clip].
- Rapid Accurate Protein Identification [Video Clip].
- Download Proteomics Pioneers Vol.3. including interviews with experts Neil Kelleher, Gil Omenn, Brad Gibson, David Lubman, Fred McLafferty, Stan Fields, Lawrence DeLucas, Joshua LaBaer, Ron Beavis, Hanno Langen, Matthias Mann and Richard Smith.
- Attend the European Proteomics Seminar Series.
 
 

 Proteomics Applications
- Large-scale characterization of HeLa cell nuclear phosphoproteins: 2,002 Phosphorylation sites were determined from 967 proteins using the MS/MS/MS (MS3) capability of the Finnigan LCQ Deca XP ion trap mass spectrometer with the XCALIBUR 1.4 software. [Search Pubmed]
- Characterization of Protein Glycosylation using ESI Chip Static Nanospray Ion Trap MSn Mass Spectrometry [Download]

More Proteomics Applications... 
 

 Software - Enter our Contest  
Your opinion matters! We strive every day to improve the usability of our software and provide features that you really need. Please take a moment to visit www.thermo.com/ms-software and tell us what you want. In return, you will be entered in a drawing to win a free palmOne(TM) Treo(TM) smartphone.

 Quantitation? Think Quantum  
Find out why the Finnigan TSQ Quantum is the most robust triple quad in the market today. [Read Article]
Previous: Sensitivity and the Quantum
Next: Linear Dynamic Range

 Small Molecule Applications
- Trace-Level Quantitation of Chloramphenicol Using the Finnigan TSQ Quantum Discovery [Download]
- Ultra-sensitive LC/MS/MS Quantitation of Lipids in Biological Fluids [Download]
- Accurate Mass Determination of a Pharmaceutical Compound Mixture Using the Finnigan TSQ Quantum Ultra AM [Download]

More Small Molecule Applications... 
 

 Trap Talk: Dynamic Exclusion  
In conventional LC/MS/MS experiments a sample is initially analyzed by mass spectrometry to identify the molecular ions of the peaks of interest. The sample is then analyzed further by performing product ion MS/MS scans on the selected peaks. This is a time-consuming process because the sample needs to be run at least twice and the MS/MS data is only recorded for a limited number of components.
Intelligent Data Dependent experiments were pioneered on Finnigan mass spectrometers to overcome these limitations. In these experiments the mass spectrometer performs the MS and MSn scans without any user intervention. The ion trap mass spectrometer is particularly well suited to this sort of experiment, not only due to its inherent sensitivity in full scan mode but also because...[Read the full article]
Previous: Wideband Activation
Next: Neutral Fragment Filter

 Profile: Beer Proteomics  
On Sin, Robert Smillie and Kate Madin
Carleton and United Beverages, Australia

 Through the Customer's Eyes
"[Finnigan] LTQ is easy to use, I don't have to spend time calibrating and tuning every day, while others are calibrating I am collecting data"

-- Lance Wells, Ph.D.
Assistant Professor of Biochemistry & Molecular Biology
Complex Carbohydrate Research Center
University of Georgia
 

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